Python Interface
- Batch Generation
- Simplified Interface
- Installation
- Examples
- Interface Generation
Python is a
powerful, high-level interpreted language that is widely used within
the particle physics community. It is particularly useful as an
interactive language that provides fast proto-typing of code. A Python
interface to PYTHIA is available. This interface is automatically
generated with Binder using the PyBind11
template library. Please note that this interface has not been
extensively tested and consequently issues may arise. If bugs are
found or additional features are required, as usual, please report
them to the PYTHIA authors. This interface is a significant departure
from the previous interface generated with SWIG, which does not
support C++11.
A complete interface ships with PYTHIA. However, in some cases this
interface might be more than needed by users and so a simplified
lightweight interface can also be generated. Note, not all PYTHIA
classes are available through this simplified interface. It is also
possible for users to automatically generate their own interface. This
is particularly useful if users modify the PYTHIA source code and need
to update the interface. When generating the interface there are three
options: the simplified interface, a full interface, and a user
defined interface. The process of generating these interfaces is
described in more detail below.
There are some idiosyncrasies when working with standard template
library classes. One of the notable examples are maps with keys as
strings. In many cases, it is useful to be able to access the settings
maps from the Settings
class of a Pythia
instance. Rather than calling something like
getFlagMap()
, getFlagMap("")
must be called
so the interface knows how to map the keys. A full working example is
given below.
import pythia8
pythia = pythia8.Pythia("", False)
settings = pythia.settings
flags = settings.getFlagMap("")
for key, val in settings.getFlagMap("").items(): print(key)
The following points highlight some of the features of the interface.
- Documentation through the built-in help function in Python
provides the relevant mappings between the Python interface and the
C++ code. For documentation on the purpose of the code, see the user
HTML manual and Doxygen.
- Templated C++ types are returned as native Python types,
e.g. vectors are returned as lists, etc. Similarly, native Python
types can be passed as arguments and are converted to their equivalent
C++ templates.
- No difference is made between passing by reference or pointer;
methods in C++ which take a pointer as an argument in Python
simply take the object, e.g.
foo(Vec4*)
and
foo(Vec4&)
are the same in the Python interface.
- All operators defined in C++, e.g.
Vec4*double
are
available. Note that reverse operators are not,
e.g. double*Vec4
.
- Classes with defined
[]
operators are iterable, using
standard Python iteration, e.g. for prt in
pythia.event
.
- Classes with a
<<
operator can be printed via
the built-in print function in Python. Note this means that a string
representation via str
is also available for these
classes in Python.
- Derived classes in Python can be passed back to PYTHIA, and should
be available for all classes. See
main293.py
for a direct
Python translation of the C++ main242.cc
example which
uses a derived class from the UserHooks
class to veto
events.
- Events can be generated in parallel using
PythiaParallel
and providing an analysis function written
in Python. This is demonstrated in main292.py
.
- Events can be generated in batch using Awkward arrays, see below
for more details as well as
main247.py
and
main248.py
.
- The constant
Pythia::info
member is available as
Pythia::infoPython
. Note, this creates a new instance of
the Info
class, and so needs to be called each time the
information might be updated.
In general, most code using PYTHIA implemented through C++ is also
possible in the Python interface. There are a number of issues, such
as passing streams, which cannot be handled in the Python
interface. Additionally, protected members of classes are exposed as
fully public members in the Python interface.
Batch Generation
Individually generating events and then accessing each particle by the Python
interface can slow things down considerably with respect to running directly
in C++. This is because the Python interface must translate the C++ PYTHIA
event record into Python as each particle is accessed by the user. Similarly,
using PythiaParallel
where a Python function is passed back to
the Pythia C++ code to perform an analysis can result in a slow down. Another
option is to batch translate events to Python using the
Awkward array
library. In this way, the event translation is all done in a
single C++ call for a group of events, rather than on a per particle
basis. An example on how to generate events with the Awkward interface
are given in main297.py
.
For this batch interface to work, your Python version must be greater
than 3.5
and the Awkward module must be available in
Python. This can be installed via pip or the Python package manager of
your choice.
python -m pip install awkward
It should then be possible to use the nextBatch
method of
the Pythia
class which is called with two arguments
nextBatch(nEvents, errorMode)
, where the second argument is
optional. In the following code, 100 events are generated and returned via the
Awkward array named events
.
pythia = pythia.Pythia()
pythia.readString("HardProcess:all = on")
pythia.init()
events = pythia.nextBatch(100)
For a single Pythia instance, failed events can be treated in
different ways using the optional errorMode
argument that
can be passed to nextBatch
.
"none"
- events that fail to generate are included
in the Awkward array as None
objects.
"skip"
- this is the default behavior, and is similar
to what PythiaParallel
also does. Events that fail to
generate are skipped, and events are generated until the requested
nEvents
is reached.
"fail"
- if an event fails to generate, then an
exception is thrown.
fac
- here, fac
is a real number greater
than 1
. This is the same as "skip"
but event
generation will terminate after fac*nEvents
attempts have
been made to generate an event and an exception will be thrown.
Some examples are given in main298.py
.
There are two other features for batch generation. First,
nextBatch
can also be called from a
PythiaParallel
instance, but without the optional
errorMode
as PythiaParallel
handles failed
events internally. Second, the momentum and production vertex
four-vectors can automatically be translated into a four-vector class
using the
scikit-hep/vector library.
python -m pip install vector
Translating automatically to this library can then be accomplished
with the following code.
import vector
vector.register_awkward()
This allows for analyses to be performed on the event record with
slicing. Some examples can be found in the
Awkward array documentation, as well as in main297.py
.
Simplified Interface
An attempt has been made to provide the everyday functionality of
PYTHIA through the simplified interface. However, if classes or
methods appear to be missing, please contact the PYTHIA authors;
additional functionality can be included upon request. The following
list highlights the available classes and methods in this interface,
roughly categorized by function. Note that help(pythia8)
will return all the available classes and methods in the interface.
- top level:
Pythia
- event access:
Event
, Particle
,
Vec4
, RotBstMatrix
- particle data:
ParticleData
,
ParticleDataEntry
, DecayChannel
- settings and information:
Info
, HIInfo
,
Settings
, Flag
, Mode
,
Parm
, Word
, FVec
,
MVec
, PVec
, WVec
- user interface pointers:
Rndm
, PDF
,
DecayHandler
, RndmEngine
,
UserHooks
, MergingHooks
,
BeamShape
, SigmaProcess
,
TimeShower
, SpaceShower
,
HeavyIons
, PartonVertex
- analysis tools:
Hist
, HistPlot
,
CellJet
, ClusterJet
, SlowJet
,
SlowJetHook
, Sphericity
,
Thrust
- kinematic functions:
m
, m2
,
dot3
, cross3
, cross4
,
theta
, costheta
, phi
,
cosphi
, RRapPhi
, REtaPhi
Installation
To install the Python interface, the Python system header
Python.h
must be available. By default when configuring
using --with-python
the system python-config
script will be used to determine the location of
Python.h
. In some cases, users might wish to use a
different version of Python, and so --with-python-config
can be used to set the Python configuration script used to pick up
paths. Alternatively, the directory containing Python.h
can be set manually with the option
--with-python-include
. Some example configurations could be
as follows,
./configure --with-python
./configure --with-python-config=python3-config
./configure --with-python-include=/usr/include/python2.7
where the Python configuration script and path must be changed
accordingly for the local system.
After configuring the Python interface for PYTHIA to be built and
running make
as usual, the following files should be
generated in the directory lib
.
pythia8.so
: compiled Python module.
libpythia8.[so,dylib]
: the standard shared PYTHIA
library.
To ensure that the pythia8.so
module is available to
Python, the system variable PYTHONPATH
should be set
similar to
export PYTHONPATH=$(PREFIX_LIB):$PYTHONPATH
where PREFIX_LIB
is the directory lib
which
contains pythia8.so
. Generally, the library paths should
be set correctly, but it also may be necessary to set
export LD_LIBRARY_PATH=$(PREFIX_LIB):$LD_LIBRARY_PATH
where DYLD
should be substituted for LD
in
OS X. Alternatively, it is also possible to define the Python path
from within Python, as is done within the provided examples. Note that
the Python module is always compiled as pythia8.so
, even
in OS X. This is because older versions of Python in OS X do not
correctly recognize modules ending with the dylib
suffix.
Examples
To use the Python interface for PYTHIA, start Python
and import pythia8
. The provided examples can be run
by python mainNNN.py
where NNN
is the number
of the example.
Interface Generation
A script for automatically generating the Python interface,
generate
, is available in plugins/python/
and should be run from this directory. This script requires that the
user has Docker installed. A small Docker image of roughly 80 MB will
be pulled to run the necessary generation code. There are a number of
command line arguments which can be passed.
--help
prints the help message for the script.
--part
generates the simplified interface. When
generate
is run without arguments, then this is the
default behaviour. Note that this requires running the interface
generation twice. The first time the required classes are interfaced,
the second time additional classes are removed.
--full
generates the full interface.
--user=FILE
generates a user defined interface using
the Binder configuration given by FILE
.
--debug
can be specified with any of the options
above and stops the temporary files used in generation from being
removed.
Whenever PYTHIA headers are modified, the Python interface is
invalidated, and so this automatic generation is particularly useful
in such a situation. An example of generating the full Python
interface is as follows.
cd plugins/python
./generate --full